STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65515.1CRISPR-associated protein GSU0054/csb2, Dpsyc system; PFAM: CRISPR-associated protein, GSU0054 family (Cas_GSU0054); TIGRFAM: CRISPR-associated protein GSU0054/csb2, Dpsyc system. (480 aa)    
Predicted Functional Partners:
CDM65514.1
CRISPR-associated protein, Csx4 family; PFAM: CRISPR-associated protein GSU0053 (Cas_GSU0053); TIGRFAM: CRISPR-associated protein GSU0053/csb1, Dpsyc system.
  
  
 0.800
CDM65513.1
TIGRFAM: CRISPR-associated protein GSU0052/csb3, Dpsyc system.
     
 0.774
CDM65512.1
CRISPR-associated helicase Cas3, subtype Dpsyc; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: CRISPR-associated helicase Cas3, subtype Dpsyc.
  
    0.759
CDM65516.1
CRISPR-associated protein GSU0054/csb2, Dpsyc system; PFAM: CRISPR-associated protein, GSU0054 family (Cas_GSU0054); TIGRFAM: CRISPR-associated protein GSU0054/csb2, Dpsyc system.
       0.605
CDM65517.1
TIGRFAM: CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE.
       0.605
CDM65518.1
PFAM: Protein of unknown function (DUF310); TIGRFAM: CRISPR type III-A/MTUBE-associated protein Csm2.
       0.605
CDM65519.1
PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-A/MTUBE-associated RAMP protein Csm3.
       0.605
CDM65520.1
Hypothetical protein; TIGRFAM: CRISPR type III-A/MTUBE-associated RAMP protein Csm4.
       0.575
CDM65521.1
PFAM: CRISPR-associated protein (Cas_APE2256); TIGRFAM: putative CRISPR-associated protein, APE2256 family.
       0.575
CDM65522.1
PFAM: Domain of unknown function (DUF1874).
       0.575
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.