STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65540.1Penicillin-binding protein, beta-lactamase class C; PFAM: Beta-lactamase. (375 aa)    
Predicted Functional Partners:
CDM64797.1
PFAM: Protein of unknown function (DUF1343).
    0.978
CDM65442.1
PFAM: Glycosyl hydrolase family 3 C-terminal domain; Glycosyl hydrolase family 3 N terminal domain.
 
 
  0.957
CDM64592.1
PFAM: Glycosyl hydrolase family 3 C-terminal domain; Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family.
 
 
  0.954
CDM64878.1
PFAM: Glycosyl hydrolase family 3 N terminal domain.
 
 
  0.945
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
  
 0.828
CDM65541.1
Predicted dehydrogenase; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold.
       0.773
CDM65443.1
PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
      0.739
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.687
CDM64583.1
Metal-dependent hydrolase; PFAM: Endonuclease/Exonuclease/phosphatase family.
      0.610
CDM64588.1
Predicted N-acetylglucosamine kinase; PFAM: BadF/BadG/BcrA/BcrD ATPase family.
 
    0.563
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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