STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65569.1PFAM: TPR repeat; Dolichyl-phosphate-mannose-protein mannosyltransferase. (643 aa)    
Predicted Functional Partners:
CDM66953.1
PFAM: TPR repeat; Tetratricopeptide repeat.
 
  
  0.773
CDM65813.1
PFAM: Tetratricopeptide repeat; TPR repeat.
 
  
  0.755
CDM64890.1
PFAM: Tetratricopeptide repeat.
  
  
  0.715
CDM65568.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component; PFAM: ABC-2 family transporter protein.
 
     0.685
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.625
CDM65457.1
PFAM: Tetratricopeptide repeat; TPR repeat.
 
  
  0.605
CDM65567.1
Hypothetical protein.
       0.600
CDM65570.1
PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
     0.597
CDM65561.1
PFAM: Tetratricopeptide repeat.
  
     0.588
CDM64835.1
Tfp pilus assembly protein PilF; PFAM: TPR repeat; Tetratricopeptide repeat.
 
     0.577
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.