STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65813.1PFAM: Tetratricopeptide repeat; TPR repeat. (316 aa)    
Predicted Functional Partners:
CDM65720.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeats (many copies); Ankyrin repeats (3 copies).
 
 0.981
CDM64739.1
PFAM: Tetratricopeptide repeat; TPR repeat.
 
 0.928
CDM65913.1
Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat; TPR repeat.
 
 0.924
CDM67184.1
Hypothetical protein.
  
 0.911
CDM66410.1
PFAM: Trypsin-like peptidase domain; PDZ domain; TIGRFAM: periplasmic serine protease, Do/DeqQ family; periplasmic serine pepetdase DegS.
   
 0.906
CDM64935.1
PFAM: Tetratricopeptide repeat.
 
 
  0.898
CDM66494.1
Predicted metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A).
  
 0.886
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.886
CDM65457.1
PFAM: Tetratricopeptide repeat; TPR repeat.
 
 
 0.873
CDM64480.1
PFAM: Tetratricopeptide repeat.
 
 0.862
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.