STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65882.1Hypothetical protein; PFAM: 3-demethylubiquinone-9 3-methyltransferase. (183 aa)    
Predicted Functional Partners:
CDM65884.1
Dihydrofolate reductase; PFAM: RibD C-terminal domain.
 
    0.827
CDM65883.1
Ketosteroid isomerase-like enzyme; PFAM: SnoaL-like domain.
 
     0.815
CDM64578.1
TIGR01777 family protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: TIGR01777 family protein.
   
    0.602
CDM65881.1
PFAM: Aminoglycoside-2''-adenylyltransferase.
       0.559
CDM65879.1
Hypothetical protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein.
 
    0.534
CDM65878.1
Hypothetical protein; PFAM: Glyoxalase-like domain.
 
  
 0.519
CDM67037.1
PFAM: Cytochrome c.
  
     0.486
CDM65880.1
Hypothetical protein.
       0.418
CDM65885.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like; PFAM: short chain dehydrogenase.
  
    0.403
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.