STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM66180.1HD-GYP domain-containing protein; PFAM: HD domain; HAMP domain. (605 aa)    
Predicted Functional Partners:
CDM64048.1
PFAM: GGDEF domain; Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
  
  0.965
CDM66306.1
PFAM: GGDEF domain; Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
  
  0.960
CDM64256.1
PFAM: GGDEF domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
 0.924
CDM65255.1
PFAM: GGDEF domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 0.916
CDM65284.1
Diguanylate cyclase with GAF sensor; PFAM: GGDEF domain; GAF domain; Sensory domain found in PocR; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 0.888
CDM66668.1
PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
   
 0.735
CDM65287.1
PFAM: HD domain; GAF domain; TIGRFAM: uncharacterized domain HDIG.
  
0.678
CDM64990.1
PFAM: HD domain; GGDEF domain; GAF domain; TIGRFAM: uncharacterized domain HDIG; diguanylate cyclase (GGDEF) domain.
 
0.665
CDM64506.1
PFAM: HD domain; GGDEF domain; GAF domain; TIGRFAM: uncharacterized domain HDIG; diguanylate cyclase (GGDEF) domain.
 
0.664
CDM65295.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.632
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.