STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM66209.1Type IV pilus secretin PilQ/competence protein; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ. (594 aa)    
Predicted Functional Partners:
CDM66206.1
PFAM: Fimbrial assembly protein (PilN).
  
 
 0.957
CDM66205.1
PFAM: Type IV pilus assembly protein PilM; TIGRFAM: type IV pilus assembly protein PilM.
 
 
 0.953
CDM66207.1
PFAM: Pilus assembly protein, PilO.
 
 
 0.937
CDM66237.1
Hypothetical protein.
   
 
 0.933
CDM66479.1
Type II secretory pathway, component PulD; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein.
 
  
 0.903
CDM65591.1
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F.
 
 
 
 0.794
CDM65588.1
Type IV-A pilus assembly ATPase PilB; PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein; TIGRFAM: type IV-A pilus assembly ATPase PilB.
 
 
 
 0.773
CDM66481.1
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F.
 
 
 
 0.701
CDM66480.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein.
 
 
 
 0.680
CDM66210.1
Hypothetical protein.
 
     0.639
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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