STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM66210.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
CDM64473.1
Predicted GTPase; PFAM: ADP-ribosylation factor family.
 
 
 0.995
CDM64474.1
Hypothetical protein; PFAM: Roadblock/LC7 domain.
  
     0.774
CDM66951.1
Hypothetical protein.
  
     0.773
CDM64428.1
Hypothetical protein.
  
     0.772
CDM64978.1
PFAM: TPR repeat; Tetratricopeptide repeat.
  
     0.767
CDM65822.1
TonB family protein; PFAM: Domain of unknown function (DUF4388); TIGRFAM: TonB family C-terminal domain.
  
     0.717
CDM66333.1
PFAM: Domain of unknown function (DUF4388).
  
     0.684
CDM66209.1
Type IV pilus secretin PilQ/competence protein; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ.
 
     0.639
CDM66952.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; Carboxypeptidase regulatory-like domain.
  
     0.638
CDM64723.1
AMP-forming long-chain acyl-CoA synthetase; PFAM: Phosphopantetheine attachment site; Male sterility protein; Acyltransferase; AMP-binding enzyme; AMP-binding enzyme C-terminal domain; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases.
  
     0.613
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.