STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM66277.1PFAM: Tetratricopeptide repeat. (446 aa)    
Predicted Functional Partners:
CDM66276.1
Lipid A core-O-antigen ligase-like enyme; PFAM: O-Antigen ligase.
 
     0.844
CDM65460.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: PKD domain.
  
     0.740
CDM66333.1
PFAM: Domain of unknown function (DUF4388).
  
     0.738
CDM66601.1
Lipid A core-O-antigen ligase-like enyme; PFAM: O-antigen ligase like membrane protein; PDZ domain.
  
     0.695
CDM65662.1
Predicted Fe-S oxidoreductase; PFAM: Radical SAM superfamily; 4Fe-4S single cluster domain.
  
     0.686
CDM67059.1
Cytochrome c biogenesis factor; PFAM: Aspartyl protease; Tetratricopeptide repeat.
  
     0.682
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.652
CDM65096.1
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.648
CDM65770.1
Beta-barrel assembly machine subunit BamA; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
  
     0.648
CDM65364.1
PFAM: Tetratricopeptide repeat.
  
     0.636
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.