STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM66284.1Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF4129); Domain of unknown function (DUF3488). (726 aa)    
Predicted Functional Partners:
CDM65047.1
PFAM: Protein of unknown function DUF58.
 
  
 0.830
CDM65046.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
   
 0.803
rimO
SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.773
CDM66282.1
Phosphatidylglycerophosphatase A-like protein; PFAM: Phosphatidylglycerophosphatase A.
       0.668
CDM66281.1
Hypothetical protein.
       0.594
CDM66280.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1; Glycosyl transferase 4-like domain.
       0.543
CDM66279.1
PFAM: NAD dependent epimerase/dehydratase family.
       0.491
CDM66278.1
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; PFAM: CoA-binding domain; Glycosyl transferase family 4.
       0.478
CDM66277.1
PFAM: Tetratricopeptide repeat.
 
    0.440
CDM66276.1
Lipid A core-O-antigen ligase-like enyme; PFAM: O-Antigen ligase.
 
     0.431
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.