STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM66559.1Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain; LysM domain. (578 aa)    
Predicted Functional Partners:
CDM66624.1
PFAM: Organic solvent tolerance protein; OstA-like protein.
  
     0.604
CDM64245.1
PFAM: SurA N-terminal domain; PPIC-type PPIASE domain.
  
     0.512
CDM64998.1
PFAM: Biopolymer transport protein ExbD/TolR.
  
     0.510
CDM66016.1
Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain; Tetratricopeptide repeat.
 
   
 0.483
CDM66560.1
Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; Subunit ChlI of Mg-chelatase; TIGRFAM: Mg chelatase-related protein.
       0.468
CDM66346.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.
  
     0.452
CDM65819.1
Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain.
 
   
 0.442
CDM65000.1
(p)ppGpp synthetase, RelA/SpoT family; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
     0.416
atpE
F0F1-type ATP synthase, subunit c/archaeal/vacuolar-type H+-ATPase, subunit K; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.416
CDM65003.1
Parvulin-like peptidyl-prolyl isomerase; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain.
  
     0.414
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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