STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM66565.1PFAM: von Willebrand factor type A domain. (439 aa)    
Predicted Functional Partners:
CDM66566.1
Mg-chelatase subunit ChlI.
 
    0.903
CDM66802.1
Uncharacterized LmbE-like protein; PFAM: NPCBM-associated, NEW3 domain of alpha-galactosidase; GlcNAc-PI de-N-acetylase.
  
     0.582
CDM65315.1
PFAM: GlcNAc-PI de-N-acetylase; TIGRFAM: bacillithiol biosynthesis deacetylase BshB1.
  
     0.482
bshC
Bacillithiol biosynthesis cysteine-adding enzyme BshC; PFAM: Uncharacterized protein conserved in bacteria (DUF2317); TIGRFAM: bacillithiol biosynthesis cysteine-adding enzyme BshC; Belongs to the BshC family.
  
     0.454
CDM66499.1
PFAM: Carboxypeptidase regulatory-like domain.
  
     0.428
CDM65317.1
N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA; PFAM: Glycosyltransferase Family 4; Glycosyl transferases group 1; TIGRFAM: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA.
  
     0.408
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.