STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM66619.1PFAM: SpoIVB peptidase S55. (614 aa)    
Predicted Functional Partners:
CDM64275.1
Hypothetical protein.
     0.801
CDM66627.1
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
 0.728
lpxA
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
 0.692
CDM66483.1
Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain; TIGRFAM: VWFA-related Acidobacterial domain.
  
     0.657
CDM65800.1
Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain; TIGRFAM: VWFA-related Acidobacterial domain.
  
     0.655
CDM66813.1
PFAM: von Willebrand factor type A domain; TIGRFAM: VWFA-related Acidobacterial domain.
  
     0.651
CDM65347.1
PFAM: von Willebrand factor type A domain; TIGRFAM: VWFA-related Acidobacterial domain.
  
     0.637
CDM66222.1
Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain; TIGRFAM: VWFA-related Acidobacterial domain.
  
     0.631
CDM66342.1
PFAM: Outer membrane protein (OmpH-like).
  
    0.587
CDM66343.1
Beta-barrel assembly machine subunit BamA; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
 
    0.579
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.