STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM66688.1PFAM: Matrixin. (457 aa)    
Predicted Functional Partners:
CDM64510.1
PFAM: Domain of unknown function (DUF1083).
  
     0.639
CDM65917.1
PFAM: Right handed beta helix region; TIGRFAM: Solibacter uncharacterized C-terminal domain.
  
     0.636
CDM65096.1
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.549
CDM64275.1
Hypothetical protein.
  
     0.544
CDM64395.1
Predicted Fe-S oxidoreductase; PFAM: Radical SAM superfamily; 4Fe-4S single cluster domain.
  
     0.508
CDM66800.1
Outer membrane receptor protein; PFAM: Carboxypeptidase regulatory-like domain.
  
     0.507
CDM66628.1
Predicted Fe-S oxidoreductase; PFAM: Radical SAM superfamily; 4Fe-4S single cluster domain.
  
     0.460
CDM66649.1
Hypothetical protein; PFAM: Rad52/22 family double-strand break repair protein; SWIM zinc finger.
  
     0.456
CDM65565.1
Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain; TIGRFAM: VWFA-related Acidobacterial domain.
  
     0.436
CDM64867.1
PFAM: TonB-dependent Receptor Plug Domain; Carboxypeptidase regulatory-like domain.
  
     0.435
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.