STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM66800.1Outer membrane receptor protein; PFAM: Carboxypeptidase regulatory-like domain. (969 aa)    
Predicted Functional Partners:
CDM65509.1
TonB family protein; PFAM: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: TonB family C-terminal domain.
  
   0.845
CDM66734.1
TonB family protein; PFAM: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: TonB family C-terminal domain.
  
   0.793
CDM65243.1
TonB family protein; PFAM: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: TonB family C-terminal domain.
  
   0.779
CDM66813.1
PFAM: von Willebrand factor type A domain; TIGRFAM: VWFA-related Acidobacterial domain.
 
     0.778
CDM64995.1
TonB family protein; PFAM: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: TonB family C-terminal domain.
  
   0.772
CDM64632.1
Dienelactone hydrolase-like enzyme; PFAM: Alpha/beta hydrolase family.
  
     0.765
CDM65565.1
Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain; TIGRFAM: VWFA-related Acidobacterial domain.
  
     0.760
CDM65823.1
TonB family protein; PFAM: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: TonB family C-terminal domain.
  
   0.760
CDM64852.1
Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB-dependent Receptor Plug Domain; Carboxypeptidase regulatory-like domain.
  
 
  0.753
CDM65800.1
Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain; TIGRFAM: VWFA-related Acidobacterial domain.
  
     0.752
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.