STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM67022.1PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease. (170 aa)    
Predicted Functional Partners:
CDM67021.1
Hypothetical protein.
     0.993
CDM67020.1
Hypothetical protein.
     0.977
CDM67016.1
Ni,Fe-hydrogenase I large subunit; PFAM: Nickel-dependent hydrogenase.
 
 0.954
CDM67018.1
Hypothetical protein.
 
     0.913
CDM67019.1
Hypothetical protein.
 
     0.912
CDM67015.1
PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; NiFe/NiFeSe hydrogenase small subunit C-terminal; TIGRFAM: hydrogenase (NiFe) small subunit (hydA).
 
  
 0.903
CDM67017.1
Thioredoxin-like protein; PFAM: NifU-like domain.
 
     0.868
CDM67011.1
PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; NiFe/NiFeSe hydrogenase small subunit C-terminal; TIGRFAM: hydrogenase (NiFe) small subunit (hydA).
 
  
 0.858
CDM67023.1
Hypothetical protein.
       0.773
CDM67029.1
Hydrogenase maturation protein HypD; PFAM: Hydrogenase formation hypA family; TIGRFAM: hydrogenase expression/formation protein HypD.
 
   
 0.720
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.