STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM67054.1Arabinose efflux permease family protein; PFAM: Transmembrane secretion effector. (437 aa)    
Predicted Functional Partners:
CDM67053.1
Uncharacterized membrane protein; PFAM: MgtC family.
       0.773
CDM67055.1
Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain.
       0.773
CDM67056.1
Hypothetical protein.
       0.773
CDM64723.1
AMP-forming long-chain acyl-CoA synthetase; PFAM: Phosphopantetheine attachment site; Male sterility protein; Acyltransferase; AMP-binding enzyme; AMP-binding enzyme C-terminal domain; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases.
    
 0.667
CDM66520.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor; PFAM: 4Fe-4S dicluster domain.
     
 0.662
CDM66162.1
AMP-forming long-chain acyl-CoA synthetase; PFAM: Phosphopantetheine attachment site; Acyltransferase; AMP-binding enzyme; AMP-binding enzyme C-terminal domain.
    
 0.654
CDM64500.1
Aminodeoxychorismate synthase, component I; PFAM: Aminotransferase class IV; chorismate binding enzyme; TIGRFAM: aminodeoxychorismate synthase, component I, bacterial clade.
   
 
 0.640
CDM64373.1
NAD(P)H-nitrite reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Reductase C-terminal; Rieske [2Fe-2S] domain.
     
 0.633
CDM65295.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.626
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
   
  0.594
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.