STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM67060.1Thermostable 8-oxoguanine DNA glycosylase; PFAM: HhH-GPD superfamily base excision DNA repair protein. (174 aa)    
Predicted Functional Partners:
CDM67059.1
Cytochrome c biogenesis factor; PFAM: Aspartyl protease; Tetratricopeptide repeat.
 
     0.817
CDM67057.1
Hypothetical protein.
       0.768
CDM67058.1
Predicted nucleic acid-binding protein, contains PIN domain; PFAM: PIN domain.
       0.768
CDM67053.1
Uncharacterized membrane protein; PFAM: MgtC family.
       0.516
CDM67054.1
Arabinose efflux permease family protein; PFAM: Transmembrane secretion effector.
       0.516
CDM67055.1
Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain.
       0.516
CDM67056.1
Hypothetical protein.
       0.516
CDM65460.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: PKD domain.
  
     0.476
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.