STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM67178.1PFAM: RHS Repeat; TIGRFAM: YD repeat (two copies). (177 aa)    
Predicted Functional Partners:
CDM66517.1
PFAM: Cytochrome C oxidase, cbb3-type, subunit III.
  
 0.762
CDM66518.1
Quinol:cytochrome c oxidoreductase membrane protein; PFAM: Protein of unknown function (DUF3341).
  
 0.762
CDM67037.1
PFAM: Cytochrome c.
  
 0.753
CDM67034.1
Glutamate synthase (NADH) large subunit; PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
    
  0.738
CDM67171.1
TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
 
     0.732
CDM66045.1
Rhs family protein; PFAM: RHS Repeat; TIGRFAM: YD repeat (two copies).
  
     0.723
CDM65184.1
PFAM: Glycosyl transferase family 2.
  
  
 0.707
CDM65185.1
PFAM: Glycosyl transferase family 2.
  
  
 0.707
CDM66262.1
PFAM: Glycosyl transferase family 2.
  
  
 0.707
CDM64529.1
PEP-CTERM putative exosortase interaction domain-containing protein; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM protein-sorting domain.
  
 0.697
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.