CISG_05585 protein (Coccidioides immitis RMSCC3703)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CISG_05585

Uncharacterized protein. (208 aa)

Predicted Functional Partners:

CISG_01543

0.988

CISG_03797

0.974

CISG_00358

0.973

CISG_08706

0.964

CISG_06355

0.962

CISG_01462

0.961

CISG_09936

0.958

CISG_00888

0.957

CISG_03289

0.946

CISG_09189

0.946

Your Current Organism:

Coccidioides immitis RMSCC3703

NCBI taxonomy Id: 454286
Other names: C. immitis RMSCC 3703, Coccidioides immitis RMSCC 3703

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CISG_00358	CISG_00888	A0A0J8QI66	A0A0J8QQR7	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	U3 small nucleolar ribonucleoprotein IMP4.	0.992
CISG_00358	CISG_01462	A0A0J8QI66	A0A0J8QZ01	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.997
CISG_00358	CISG_01543	A0A0J8QI66	A0A0J8TVA1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	GTP binding protein Bms1.	0.991
CISG_00358	CISG_03289	A0A0J8QI66	A0A0J8QK87	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	CGI-48 family protein.	0.995
CISG_00358	CISG_03797	A0A0J8QI66	A0A0J8TJ40	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
CISG_00358	CISG_05585	A0A0J8QI66	A0A0J8TR75	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.973
CISG_00358	CISG_06355	A0A0J8QI66	A0A0J8QWQ6	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	U3 small nucleolar RNA-associated protein 5.	0.993
CISG_00358	CISG_08706	A0A0J8QI66	A0A0J8RA41	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.997
CISG_00358	CISG_09189	A0A0J8QI66	A0A0J8RAT1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BFR2 protein.	0.993
CISG_00358	CISG_09936	A0A0J8QI66	A0A0J8TH19	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Sas10/Utp3 family protein.	0.999
CISG_00888	CISG_00358	A0A0J8QQR7	A0A0J8QI66	U3 small nucleolar ribonucleoprotein IMP4.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.992
CISG_00888	CISG_01462	A0A0J8QQR7	A0A0J8QZ01	U3 small nucleolar ribonucleoprotein IMP4.	Uncharacterized protein.	0.992
CISG_00888	CISG_01543	A0A0J8QQR7	A0A0J8TVA1	U3 small nucleolar ribonucleoprotein IMP4.	GTP binding protein Bms1.	0.995
CISG_00888	CISG_03289	A0A0J8QQR7	A0A0J8QK87	U3 small nucleolar ribonucleoprotein IMP4.	CGI-48 family protein.	0.997
CISG_00888	CISG_03797	A0A0J8QQR7	A0A0J8TJ40	U3 small nucleolar ribonucleoprotein IMP4.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.991
CISG_00888	CISG_05585	A0A0J8QQR7	A0A0J8TR75	U3 small nucleolar ribonucleoprotein IMP4.	Uncharacterized protein.	0.957
CISG_00888	CISG_06355	A0A0J8QQR7	A0A0J8QWQ6	U3 small nucleolar ribonucleoprotein IMP4.	U3 small nucleolar RNA-associated protein 5.	0.997
CISG_00888	CISG_08706	A0A0J8QQR7	A0A0J8RA41	U3 small nucleolar ribonucleoprotein IMP4.	Uncharacterized protein.	0.993
CISG_00888	CISG_09189	A0A0J8QQR7	A0A0J8RAT1	U3 small nucleolar ribonucleoprotein IMP4.	BFR2 protein.	0.994
CISG_00888	CISG_09936	A0A0J8QQR7	A0A0J8TH19	U3 small nucleolar ribonucleoprotein IMP4.	Sas10/Utp3 family protein.	0.993