STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ93877.1CRISPR-associated protein, Cse2 family. (179 aa)    
Predicted Functional Partners:
SFJ93846.1
CRISPR-associated protein, Cse1 family.
 
 
 0.999
SFJ93905.1
CRISPR-associated protein, Cse4 family.
 
 
 0.999
SFJ93933.1
CRISPR system Cascade subunit CasD.
 
 
 0.998
SFJ93821.1
CRISPR-associated helicase, Cas3 family.
 
  
 0.963
SFJ93958.1
CRISPR-associated protein, Cse3 family.
 
   
 0.948
SFJ94022.1
CRISPR-associated protein, Cas2 family.
 
   
 0.936
cas1
CRISP-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.935
SFJ93797.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
       0.654
SFJ93979.1
KilA-N domain-containing protein.
       0.631
Your Current Organism:
Methylophaga sulfidovorans
NCBI taxonomy Id: 45496
Other names: CIP 105175, DSM 11578, JCM 21498, LMD 95.210, M. sulfidovorans, Methyliphaga sulfidovorans, NBRC 102423, strain RB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.