STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK07292.1Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain. (668 aa)    
Predicted Functional Partners:
SFK07222.1
Von Willebrand factor type A domain-containing protein.
 
     0.895
SFK07242.1
MotA/TolQ/ExbB proton channel family protein.
 
     0.894
SFK07311.1
Hypothetical protein.
  
 
 0.874
SFK07335.1
Hypothetical protein.
       0.809
SFK07356.1
Hypothetical protein.
       0.694
SFJ94729.1
Chalcone isomerase-like.
  
 
 0.671
SFK57269.1
Hypothetical protein.
  
     0.603
SFK49089.1
MerC mercury resistance protein.
  
     0.588
SFK07201.1
Hypothetical protein.
       0.562
SFK07377.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
    
  0.496
Your Current Organism:
Methylophaga sulfidovorans
NCBI taxonomy Id: 45496
Other names: CIP 105175, DSM 11578, JCM 21498, LMD 95.210, M. sulfidovorans, Methyliphaga sulfidovorans, NBRC 102423, strain RB-1
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