STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcsEL-serine/homoserine O-acetyltransferase. (331 aa)    
Predicted Functional Partners:
metC
Cystathionine beta-lyase.
 
  
 0.859
Ljam_0004
Phosphoribosylglycinamide synthetase ATP-grasp (A) domain protein.
       0.773
Ljam_0005
Hypothetical protein.
       0.773
Ljam_0007
Receptor family ligand binding region.
       0.773
Ljam_0008
Sensor histidine kinase.
       0.773
Ljam_0003
Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
     
 0.755
Ljam_0002
Hypothetical protein.
       0.746
ycgE
HTH-type transcriptional repressor YcgE.
  
 
 0.655
Ljam_0001
Lysophospholipase A.
       0.636
Ljam_0724
Cysteine synthase.
  
 
 0.611
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.