Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ljam_0061Putative ABC transport system permease. (251 aa)    
Predicted Functional Partners:
Ljam_0060
Putative transmembrane protein.
  
 0.953
Ljam_0220
ABC transporter ATP binding protein.
  
 0.883
ttg2A
Toluene tolerance ABC transporter ATP binding protein Ttg2A.
  
 0.883
Ljam_0059
Hypothetical protein.
       0.866
Ljam_0221
ABC transport system periplasmic substrate binding protein.
  
 0.676
yrbD
Toluene transporter subunit: membrane component of ABC superfamily protein.
  
 0.667
potA
Spermidine/putrescine ABC transporter, ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
    
  0.540
Ljam_1284
Putative anti-sigma-B factor antagonist (Anti-anti-sigma-B factor).
  
 0.540
Ljam_0062
Hypothetical protein.
       0.475
ttg2D
Toluene tolerance protein Ttg2D.
  
 
 0.411
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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