Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0076 | Ljam_0503 | Ljam_0076 | Ljam_0503 | Putative chaperone-modulator protein CbpM. | Polyketide synthase. | 0.414 |
Ljam_0076 | Ljam_1060 | Ljam_0076 | Ljam_1060 | Putative chaperone-modulator protein CbpM. | Polyketide synthase. | 0.414 |
Ljam_0076 | cbpA | Ljam_0076 | Ljam_0075 | Putative chaperone-modulator protein CbpM. | DNA-binding protein DnaJ. | 0.996 |
Ljam_0503 | Ljam_0076 | Ljam_0503 | Ljam_0076 | Polyketide synthase. | Putative chaperone-modulator protein CbpM. | 0.414 |
Ljam_0503 | Ljam_1060 | Ljam_0503 | Ljam_1060 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_0503 | cbpA | Ljam_0503 | Ljam_0075 | Polyketide synthase. | DNA-binding protein DnaJ. | 0.982 |
Ljam_0503 | dnaK | Ljam_0503 | Ljam_2735 | Polyketide synthase. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.688 |
Ljam_0503 | grpE | Ljam_0503 | Ljam_2734 | Polyketide synthase. | Heat shock protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP- [...] | 0.434 |
Ljam_0503 | htpG | Ljam_0503 | Ljam_0841 | Polyketide synthase. | Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity. | 0.718 |
Ljam_0503 | ppiB | Ljam_0503 | Ljam_0289 | Polyketide synthase. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin-type PPIase family); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.984 |
Ljam_0503 | queF | Ljam_0503 | Ljam_2509 | Polyketide synthase. | GTP cyclohydrolase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | 0.577 |
Ljam_0503 | rplO | Ljam_0503 | Ljam_2184 | Polyketide synthase. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.976 |
Ljam_0503 | rplQ | Ljam_0503 | Ljam_2190 | Polyketide synthase. | 50S ribosomal protein L17. | 0.979 |
Ljam_1060 | Ljam_0076 | Ljam_1060 | Ljam_0076 | Polyketide synthase. | Putative chaperone-modulator protein CbpM. | 0.414 |
Ljam_1060 | Ljam_0503 | Ljam_1060 | Ljam_0503 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_1060 | cbpA | Ljam_1060 | Ljam_0075 | Polyketide synthase. | DNA-binding protein DnaJ. | 0.982 |
Ljam_1060 | dnaK | Ljam_1060 | Ljam_2735 | Polyketide synthase. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.688 |
Ljam_1060 | grpE | Ljam_1060 | Ljam_2734 | Polyketide synthase. | Heat shock protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP- [...] | 0.434 |
Ljam_1060 | htpG | Ljam_1060 | Ljam_0841 | Polyketide synthase. | Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity. | 0.725 |
Ljam_1060 | ppiB | Ljam_1060 | Ljam_0289 | Polyketide synthase. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin-type PPIase family); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.984 |
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