STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimK_1Glutathione synthase, ribosomal protein S6 modification protein; Belongs to the RimK family. (302 aa)    
Predicted Functional Partners:
Ljam_0094
Succinylglutamate desuccinylase / aspartoacylase family protein.
 
     0.964
Ljam_2087
Succinylglutamate desuccinylase/aspartoacylase.
 
     0.730
Ljam_1824
Secreted protein.
 
     0.712
Ljam_0090
Cytochrome c oxidase assembly protein.
     
 0.695
Ljam_0092
SCO1/SenC family transporter protein.
       0.693
Ljam_0088
SURF1 family protein.
       0.690
Ljam_0089
Hypothetical protein.
       0.690
cyoE
Polyprenyltransferase (cytochrome oxidase assembly factor); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.690
Ljam_0087
Hypothetical protein.
       0.629
Ljam_2491
Phosphatase.
       0.431
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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