STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_0098LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (292 aa)    
Predicted Functional Partners:
Ljam_2862
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.694
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
   0.593
hit1
Diadenosine tetraphosphate (Ap4A) hydrolase-like HIT family hydrolase.
       0.517
Ljam_2137
Hypothetical protein.
  
     0.495
cspD_1
Cold shock protein CspD.
       0.433
Ljam_1802
Ninein.
  
    0.426
Ljam_0525
AraC family transcriptional regulator.
  
  
 0.417
Ljam_0458
Putative asmA protein.
  
     0.401
Ljam_2273
DNA-binding response regulator.
  
     0.400
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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