Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
icmSProtein IcmS. (114 aa)    
Predicted Functional Partners:
Ljam_0120
Protein IcmO (DotL).
   
 
 0.962
icmW
Intracellular multiplication protein IcmW.
    
 
 0.953
Ljam_1627
Virulence protein.
    
 
 0.953
Ljam_0115
IcmT protein.
     
 0.895
icmQ
IcmQ protein.
     
 0.850
icmP
IcmP protein.
     
 0.834
rssA_1
Esterase of the alpha-beta hydrolase superfamily protein.
    
   0.787
Ljam_0247
DotB.
      
 0.609
icmX
Intracellular multiplication protein IcmX.
      
 0.609
Ljam_0117
Hypothetical protein.
       0.509
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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