Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_0122Protein IcmM (DotJ). (94 aa)    
Predicted Functional Partners:
dotF
Component of the Dot/Icm secretion system.
     
 0.927
Ljam_0123
Protein IcmL (DotI).
     
 0.891
Ljam_0124
IcmK protein.
     
 0.872
Ljam_0125
Protein IcmE (DotG).
     
 0.872
lphA
LphA (DotK).
     
 0.861
Ljam_0127
IcmC (DotE).
     
 0.839
icmD_1
Protein IcmD (DotP).
     
 0.828
Ljam_0120
Protein IcmO (DotL).
     
 0.768
Ljam_0129
IcmJ protein.
     
 0.765
icmP
IcmP protein.
     
 0.734
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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