STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_0127IcmC (DotE). (194 aa)    
Predicted Functional Partners:
dotF
Component of the Dot/Icm secretion system.
     
 0.794
Ljam_0123
Protein IcmL (DotI).
     
 0.756
Ljam_0125
Protein IcmE (DotG).
       0.752
Ljam_0124
IcmK protein.
       0.738
icmD_1
Protein IcmD (DotP).
     
 0.736
Ljam_0122
Protein IcmM (DotJ).
     
 0.725
lphA
LphA (DotK).
       0.705
Ljam_0129
IcmJ protein.
       0.570
icmP
IcmP protein.
       0.495
Ljam_0120
Protein IcmO (DotL).
       0.495
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.