Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ljam_0220ABC transporter ATP binding protein. (245 aa)    
Predicted Functional Partners:
Ljam_0219
ABC transporter permease.
 
 0.999
Ljam_0221
ABC transport system periplasmic substrate binding protein.
 
 0.997
ttg2B
Toluene tolerance protein Ttg2B.
 
 0.991
yrbD
Toluene transporter subunit: membrane component of ABC superfamily protein.
 
 0.987
Ljam_1284
Putative anti-sigma-B factor antagonist (Anti-anti-sigma-B factor).
  
 0.975
Ljam_0222
Transport protein.
 
 
  0.938
ttg2D
Toluene tolerance protein Ttg2D.
  
 
 0.894
Ljam_0061
Putative ABC transport system permease.
  
 0.883
ttg2A
Toluene tolerance ABC transporter ATP binding protein Ttg2A.
     
  0.834
Ljam_0060
Putative transmembrane protein.
  
 0.798
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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