Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ljam_0221ABC transport system periplasmic substrate binding protein. (307 aa)    
Predicted Functional Partners:
Ljam_0220
ABC transporter ATP binding protein.
 
 0.997
Ljam_0219
ABC transporter permease.
 
 0.996
Ljam_0222
Transport protein.
 
  0.989
ttg2A
Toluene tolerance ABC transporter ATP binding protein Ttg2A.
 
 0.960
ttg2D
Toluene tolerance protein Ttg2D.
  
 0.953
ttg2B
Toluene tolerance protein Ttg2B.
 
 0.949
Ljam_1284
Putative anti-sigma-B factor antagonist (Anti-anti-sigma-B factor).
  
 0.893
yrbD
Toluene transporter subunit: membrane component of ABC superfamily protein.
     
  0.834
pal
Peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL); Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
  0.807
cpoB
Outer membrane protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
     0.749
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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