Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ljam_0295Sensor protein LuxN. (428 aa)    
Predicted Functional Partners:
fixL
Sensor histidine kinase.
 
0.946
Ljam_0183
Sensory box histidine kinase/response regulator.
 
 0.945
Ljam_1150
Sensory box histidine kinase/response regulator.
 
 0.944
Ljam_1227
Sensory box histidine kinase/response regulator.
 
 0.943
Ljam_0431
Sensory box histidine kinase/response regulator.
 
0.929
Ljam_0294
Two component response regulator.
 
  0.908
gacS/letS
Transmission sensor LetS.
 
 0.878
Ljam_1547
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.
    
 0.791
Ljam_0073
GGDEF domain-containing sensory box protein.
  
 0.715
Ljam_1741
Regulatory protein (GGDEF and EAL domains).
  
 0.715
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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