Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
motB_1Flagellar motor protein MotB. (277 aa)    
Predicted Functional Partners:
motA2
Flagellar motor protein MotA.
 
 0.999
motC
Flagellar motor protein.
 
 0.996
flgK
Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.
 
  
 0.972
Ljam_0873
Flagellar protein FliS.
 
  
 0.959
Ljam_0772
Chemotaxis histidine kinase.
  
  
 0.946
fliA
Flagellar biosynthesis sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
  
 0.942
flgG
Flagellar basal body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
 
 
 0.941
flgE
Flagellar hook protein FlgE.
 
  
 0.938
flgL
Flagellar hook-associated protein FlgL.
 
  
 0.935
flgC
Flagellar basal body rod protein FlgC.
 
  
 0.934
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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