Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hpcD5-carboxymethyl-2-hydroxymuconate Delta-isomerase. (115 aa)    
Predicted Functional Partners:
Ljam_0346
ABC transporter ATP-binding protein.
       0.709
Ljam_0347
Hypothetical protein.
       0.709
nagK
Fumarylpyruvate hydrolase.
  
 
 0.590
Ljam_1224
Hypothetical protein.
  
     0.488
Ljam_0835
Oxidoreductase.
     
  0.486
Ljam_1069
Fumarylacetoacetate hydrolase.
  
 
 0.461
Ljam_0859
Piperidine-6-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.456
Ljam_2330
Hypothetical protein.
  
     0.425
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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