STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_0412Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family. (282 aa)    
Predicted Functional Partners:
Ljam_0413
LphB.
 
    0.909
Ljam_0380
Hypothetical protein.
 
  
 0.895
Ljam_0381
Hypothetical protein.
 
  
 0.770
Ljam_0450
Cytokinin oxidase.
 
  
 0.690
atpD
ATP synthase F0F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
  0.686
Ljam_0500
Electron transferring flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.646
Ljam_0503
Polyketide synthase.
  
 
 0.631
Ljam_1060
Polyketide synthase.
  
 
 0.631
capD
Nucleoside-diphosphate sugar epimerase.
       0.626
Ljam_2438
L-gulono-gamma-lactone oxidase.
    
 0.564
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.