Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
Ljam_0418ABC transporter, ATP binding/permease protein MsbA. (605 aa)    
Predicted Functional Partners:
Ljam_0503
Polyketide synthase.
 
 0.887
Ljam_1060
Polyketide synthase.
 
 0.886
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.569
Ljam_1149
Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.567
Ljam_2334
ABC transporter.
  
 
 
0.546
Ljam_1459
Non-ribosomal peptide synthetase/polyketide synthetase.
 
 
 0.543
Ljam_0346
ABC transporter ATP-binding protein.
  
 
  0.534
Ljam_1460
Polyketide synthase.
 
 0.523
Ljam_2335
Hypothetical protein; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
  
 
 
0.519
Ljam_1879
ABC transporter.
  
 
 
0.513
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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