Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_0449Hypothetical protein. (250 aa)    
Predicted Functional Partners:
Ljam_0450
Cytokinin oxidase.
 
     0.943
iraA
Small-molecule methyltransferase IraA.
  
     0.773
Ljam_0413
LphB.
  
     0.772
Ljam_1124
Coiled-coil protein.
  
     0.771
Ljam_2038
Hypothetical protein.
  
     0.769
Ljam_1560
Hypothetical protein.
  
     0.767
Ljam_0448
Kynurenine 3-monooxygenase.
 
  0.754
Ljam_1842
Hypothetical protein.
  
     0.749
Ljam_2229
Hypothetical protein.
  
     0.749
yjeA
Endo-1,4-beta-xylanase-like protein.
  
     0.729
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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