STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_0486Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family protein. (729 aa)    
Predicted Functional Partners:
Ljam_0487
Hypothetical protein.
  
    0.827
Ljam_0489
Thaumatin domain-containing protein.
    
  0.601
Ljam_0488
Hypothetical protein.
       0.586
rtxA-1
Structural toxin protein RtxA.
  
 0.565
ftsK
Cell division protein FtsK.
    
 
 0.557
Ljam_0485
Von Willebrand factor type A domain protein.
 
     0.548
Ljam_2740
Serine metalloprotease; Belongs to the peptidase S8 family.
 
 0.528
tolA
TolA colicin import membrane protein.
  
 
  0.478
Ljam_2224
Putative ATPase.
  
    0.441
Ljam_2360
3'-nucleotidase/nuclease.
  
  
  0.435
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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