Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ljam_0507Hypothetical protein. (489 aa)    
Predicted Functional Partners:
rtxA-1
Structural toxin protein RtxA.
  
 0.565
ftsK
Cell division protein FtsK.
    
 
 0.557
Ljam_2740
Serine metalloprotease; Belongs to the peptidase S8 family.
  
 0.460
Ljam_0503
Polyketide synthase.
  
 
 0.422
Ljam_1060
Polyketide synthase.
  
 
 0.422
pepO
Metallopeptidase PepO, peptidase, M13 family transporter.
 
    0.416
Ljam_1200
Cytosolic IMP-GMP specific 5'-nucleotidase.
  
 
   0.407
tolA
TolA colicin import membrane protein.
    
  0.403
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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