STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_0516Putative sulfate transport protein CysZ. (237 aa)    
Predicted Functional Partners:
Ljam_0517
Hypothetical protein.
       0.583
Ljam_0518
RES domain-containing protein.
       0.583
prs_1
Ribose-phosphate pyrophosphokinase.
       0.552
suhB_1
Inositol-1-monophosphatase.
       0.552
recF
RecF recombinational DNA repair ATPase; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
     0.519
Ljam_2000
SCP-2 sterol transfer family protein.
  
     0.517
truD
Hydrogenase; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
  
     0.500
fis_2
Fis transcriptional activator; Belongs to the transcriptional regulatory Fis family.
  
     0.493
Ljam_1966
Hypothetical protein; Belongs to the UPF0149 family.
  
     0.461
Ljam_0842
Hypothetical protein.
  
     0.416
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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