truA protein (Legionella jamestowniensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

truA

tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (262 aa)

Predicted Functional Partners:

trpF

0.867

trpB

0.857

truB

0.852

rpoA

0.840

rsmH

0.823

Ljam_2386

0.778

rplQ

0.734

trpA

0.726

cysS

0.726

glnS

0.674

Your Current Organism:

Legionella jamestowniensis

NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ljam_2386	rplQ	Ljam_2386	Ljam_2190	Thiazole biosynthesis adenylyltransferase ThiF.	50S ribosomal protein L17.	0.495
Ljam_2386	truA	Ljam_2386	Ljam_0562	Thiazole biosynthesis adenylyltransferase ThiF.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.778
cysS	glnS	Ljam_0567	Ljam_0566	cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	glutaminyl-tRNA synthetase.	0.935
cysS	trpA	Ljam_0567	Ljam_0565	cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.	0.863
cysS	trpB	Ljam_0567	Ljam_0564	cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.	0.657
cysS	trpF	Ljam_0567	Ljam_0563	cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	N-(5'-phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family.	0.689
cysS	truA	Ljam_0567	Ljam_0562	cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.726
glnS	cysS	Ljam_0566	Ljam_0567	glutaminyl-tRNA synthetase.	cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.935
glnS	trpA	Ljam_0566	Ljam_0565	glutaminyl-tRNA synthetase.	Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.	0.885
glnS	trpB	Ljam_0566	Ljam_0564	glutaminyl-tRNA synthetase.	Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.	0.679
glnS	trpF	Ljam_0566	Ljam_0563	glutaminyl-tRNA synthetase.	N-(5'-phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family.	0.661
glnS	truA	Ljam_0566	Ljam_0562	glutaminyl-tRNA synthetase.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.674
rplQ	Ljam_2386	Ljam_2190	Ljam_2386	50S ribosomal protein L17.	Thiazole biosynthesis adenylyltransferase ThiF.	0.495
rplQ	rpoA	Ljam_2190	Ljam_2189	50S ribosomal protein L17.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rplQ	truA	Ljam_2190	Ljam_0562	50S ribosomal protein L17.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.734
rplQ	truB	Ljam_2190	Ljam_1662	50S ribosomal protein L17.	tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.	0.688
rpoA	rplQ	Ljam_2189	Ljam_2190	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	50S ribosomal protein L17.	0.999
rpoA	truA	Ljam_2189	Ljam_0562	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.840
rpoA	truB	Ljam_2189	Ljam_1662	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.	0.673
rsmH	truA	Ljam_1395	Ljam_0562	S-adenosylmethyl transferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.823

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About