STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycgEHTH-type transcriptional repressor YcgE. (297 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.868
Ljam_0073
GGDEF domain-containing sensory box protein.
   
 0.854
Ljam_1741
Regulatory protein (GGDEF and EAL domains).
   
 0.854
Ljam_1850
Regulatory protein (GGDEF, PAS, PAC domains).
   
 0.852
Ljam_0503
Polyketide synthase.
  
 0.843
Ljam_1060
Polyketide synthase.
  
 0.843
Ljam_0183
Sensory box histidine kinase/response regulator.
   
 0.818
Ljam_0431
Sensory box histidine kinase/response regulator.
   
 0.818
Ljam_1150
Sensory box histidine kinase/response regulator.
   
 0.818
Ljam_1227
Sensory box histidine kinase/response regulator.
   
 0.818
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.