Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0044 | Ljam_0503 | Ljam_0044 | Ljam_0503 | Oxydoreductase. | Polyketide synthase. | 0.668 |
Ljam_0044 | Ljam_0583 | Ljam_0044 | Ljam_0583 | Oxydoreductase. | Pyruvate dehydrogenase E1 component oxidoreductase protein AceE; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.648 |
Ljam_0044 | Ljam_1547 | Ljam_0044 | Ljam_1547 | Oxydoreductase. | 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion. | 0.997 |
Ljam_0044 | aceF | Ljam_0044 | Ljam_0584 | Oxydoreductase. | Pyruvate dehydrogenase (dihydrolipoyltransacetylase component) E2p; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.879 |
Ljam_0044 | odpB | Ljam_0044 | Ljam_2363 | Oxydoreductase. | Pyruvate dehydrogenase E1 subunit beta. | 0.920 |
Ljam_0044 | pdhA | Ljam_0044 | Ljam_2364 | Oxydoreductase. | Pyruvate dehydrogenase e1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). | 0.858 |
Ljam_0044 | sucA | Ljam_0044 | Ljam_1618 | Oxydoreductase. | 2-oxoglutarate dehydrogenase E1. | 0.877 |
Ljam_0503 | Ljam_0044 | Ljam_0503 | Ljam_0044 | Polyketide synthase. | Oxydoreductase. | 0.668 |
Ljam_0503 | Ljam_0583 | Ljam_0503 | Ljam_0583 | Polyketide synthase. | Pyruvate dehydrogenase E1 component oxidoreductase protein AceE; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.774 |
Ljam_0503 | Ljam_1547 | Ljam_0503 | Ljam_1547 | Polyketide synthase. | 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion. | 0.924 |
Ljam_0503 | Ljam_1977 | Ljam_0503 | Ljam_1977 | Polyketide synthase. | Oxydoreductase. | 0.668 |
Ljam_0503 | aceF | Ljam_0503 | Ljam_0584 | Polyketide synthase. | Pyruvate dehydrogenase (dihydrolipoyltransacetylase component) E2p; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.854 |
Ljam_0503 | lpdA | Ljam_0503 | Ljam_0585 | Polyketide synthase. | Dihydrolipoyl dehydrogenase. | 0.668 |
Ljam_0503 | odpB | Ljam_0503 | Ljam_2363 | Polyketide synthase. | Pyruvate dehydrogenase E1 subunit beta. | 0.869 |
Ljam_0503 | pdhA | Ljam_0503 | Ljam_2364 | Polyketide synthase. | Pyruvate dehydrogenase e1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). | 0.839 |
Ljam_0503 | sucA | Ljam_0503 | Ljam_1618 | Polyketide synthase. | 2-oxoglutarate dehydrogenase E1. | 0.535 |
Ljam_0503 | sucC | Ljam_0503 | Ljam_1616 | Polyketide synthase. | Succinyl CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.891 |
Ljam_0583 | Ljam_0044 | Ljam_0583 | Ljam_0044 | Pyruvate dehydrogenase E1 component oxidoreductase protein AceE; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Oxydoreductase. | 0.648 |
Ljam_0583 | Ljam_0503 | Ljam_0583 | Ljam_0503 | Pyruvate dehydrogenase E1 component oxidoreductase protein AceE; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Polyketide synthase. | 0.774 |
Ljam_0583 | Ljam_1547 | Ljam_0583 | Ljam_1547 | Pyruvate dehydrogenase E1 component oxidoreductase protein AceE; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion. | 0.794 |
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