STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_0680Hypothetical protein. (220 aa)    
Predicted Functional Partners:
Ljam_0675
Hypothetical protein.
 
     0.965
Ljam_0686
Tfp pilus assembly, pilus retraction ATPase PilT.
 
     0.964
Ljam_0687
Membrane protein.
 
     0.964
Ljam_0681
Hypothetical protein.
 
     0.953
Ljam_0682
Membrane protein.
 
     0.953
Ljam_0683
Hypothetical protein.
 
     0.953
Ljam_0685
TraU protein.
 
     0.950
Ljam_0673
Bile acid beta-glucosidase.
 
     0.949
Ljam_0674
Hypothetical protein.
 
     0.949
Ljam_0684
Type IV secretory protein VirB4 component.
 
     0.946
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.