Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_0700Putative Antitoxin higA-2. (157 aa)    
Predicted Functional Partners:
higB
Toxin higB-2.
 
 
 
 0.908
Ljam_0701
Hypothetical protein.
 
     0.881
Ljam_2538
Isochorismatase family protein.
   
    0.592
Ljam_0196
DNA-binding protein; Belongs to the Dps family.
   
    0.509
fitB
Toxin FitB.
 
     0.450
higA
Antitoxin HigA.
  
     0.433
Ljam_1418
Putative transcriptional regulator.
  
     0.426
Ljam_1273
N-acetyltransferase GCN5.
  
     0.425
Ljam_1419
Hypothetical protein.
 
    0.405
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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