Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0700 | Ljam_0701 | Ljam_0700 | Ljam_0701 | Putative Antitoxin higA-2. | Hypothetical protein. | 0.881 |
Ljam_0700 | fitB | Ljam_0700 | Ljam_2293 | Putative Antitoxin higA-2. | Toxin FitB. | 0.451 |
Ljam_0700 | higB | Ljam_0700 | Ljam_2022 | Putative Antitoxin higA-2. | Toxin higB-2. | 0.953 |
Ljam_0701 | Ljam_0700 | Ljam_0701 | Ljam_0700 | Hypothetical protein. | Putative Antitoxin higA-2. | 0.881 |
Ljam_0701 | Ljam_2023 | Ljam_0701 | Ljam_2023 | Hypothetical protein. | Putative Antitoxin higA-2. | 0.453 |
Ljam_0701 | Ljam_2816 | Ljam_0701 | Ljam_2816 | Hypothetical protein. | Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | 0.520 |
Ljam_0701 | Ljam_2817 | Ljam_0701 | Ljam_2817 | Hypothetical protein. | PIN domain protein. | 0.613 |
Ljam_0701 | fitB | Ljam_0701 | Ljam_2293 | Hypothetical protein. | Toxin FitB. | 0.467 |
Ljam_0701 | higB | Ljam_0701 | Ljam_2022 | Hypothetical protein. | Toxin higB-2. | 0.426 |
Ljam_2023 | Ljam_0701 | Ljam_2023 | Ljam_0701 | Putative Antitoxin higA-2. | Hypothetical protein. | 0.453 |
Ljam_2023 | fitB | Ljam_2023 | Ljam_2293 | Putative Antitoxin higA-2. | Toxin FitB. | 0.507 |
Ljam_2023 | higB | Ljam_2023 | Ljam_2022 | Putative Antitoxin higA-2. | Toxin higB-2. | 0.990 |
Ljam_2816 | Ljam_0701 | Ljam_2816 | Ljam_0701 | Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | Hypothetical protein. | 0.520 |
Ljam_2816 | Ljam_2817 | Ljam_2816 | Ljam_2817 | Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | PIN domain protein. | 0.953 |
Ljam_2816 | fitB | Ljam_2816 | Ljam_2293 | Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | Toxin FitB. | 0.847 |
Ljam_2817 | Ljam_0701 | Ljam_2817 | Ljam_0701 | PIN domain protein. | Hypothetical protein. | 0.613 |
Ljam_2817 | Ljam_2816 | Ljam_2817 | Ljam_2816 | PIN domain protein. | Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | 0.953 |
fitB | Ljam_0700 | Ljam_2293 | Ljam_0700 | Toxin FitB. | Putative Antitoxin higA-2. | 0.451 |
fitB | Ljam_0701 | Ljam_2293 | Ljam_0701 | Toxin FitB. | Hypothetical protein. | 0.467 |
fitB | Ljam_2023 | Ljam_2293 | Ljam_2023 | Toxin FitB. | Putative Antitoxin higA-2. | 0.507 |
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