Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ljam_0708Phosphotransferase enzyme family protein. (333 aa)    
Predicted Functional Partners:
Ljam_2442
Putative aminoglycoside phosphotransferase.
 
     0.765
Ljam_2499
Conserved protein of unknown function [ankyrin repeat].
  
     0.746
Ljam_0485
Von Willebrand factor type A domain protein.
  
     0.745
Ljam_0408
Chitinase.
  
     0.736
Ljam_0710
Aminoglycoside 6'-N-acetyltransferase.
 
 
   0.715
Ljam_2390
Hypothetical protein.
  
     0.688
plaB
Phospholipase.
  
     0.668
Ljam_1148
Aminoglycoside 3-N-acetyltransferase.
 
     0.667
Ljam_0433
GNAT family acetyltransferase.
  
     0.665
Ljam_2438
L-gulono-gamma-lactone oxidase.
  
 
   0.652
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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