STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treFAlpha,alpha-trehalase. (514 aa)    
Predicted Functional Partners:
Ljam_2025
Trehalose-6-phosphate synthase.
 
 0.951
Ljam_0726
Glucoamylase.
  
  
  0.654
btuE
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
 
 
    0.632
Ljam_0716
Serine/threonine protein kinase.
       0.568
glk
Glucokinase; Belongs to the bacterial glucokinase family.
     
 0.506
Ljam_0718
GGDEF domain-containing protein.
       0.488
ywtG_1
D-xylose proton symporter.
 
     0.460
Ljam_1928
Hypothetical protein.
   
 
  0.430
Ljam_2728
HAD-superfamily hydrolase.
   
 
  0.430
kefC_2
Glutathione-regulated potassium efflux system; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
      
 0.424
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.