STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_0759Ser/Thr protein kinase. (293 aa)    
Predicted Functional Partners:
Ljam_0503
Polyketide synthase.
  
 0.886
Ljam_1060
Polyketide synthase.
  
 0.886
Ljam_1557
Serine/threonine-protein kinase.
  
  
  0.858
Ljam_1934
Ser/Thr protein kinase.
  
  
  0.812
Ljam_1360
Ser/Thr protein kinase.
  
  
  0.811
Ljam_0664
Lipoprotein NlpI.
 
 0.799
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  0.735
Ljam_0183
Sensory box histidine kinase/response regulator.
    
 0.716
Ljam_0431
Sensory box histidine kinase/response regulator.
    
 0.716
Ljam_1150
Sensory box histidine kinase/response regulator.
    
 0.716
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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